Publications

• Carney KR, Khan AM, Stam S & Samson SC (2023). Nascent adhesions shorten the period of lamellipodium protrusion through the Brownian ratchet mechanism. Molecular biology of the cell. Vol. 34, ar115ar115. Published, 11/01/2023.
• Bidone TC (2023). Multiscale models of integrins and cellular adhesions. Current opinion in structural biology. Vol. 80, 102576102576. Published, 06/01/2023.
• Tong D & Soley N (2023). Integrin αIIbβ3 intermediates: From molecular dynamics to adhesion assembly. Biophysical journal. Vol. 122, 533543533-543. Published, 02/01/2023.
• Rabbitt RD (2023). A parametric blueprint for optimum cochlear outer hair cell design. Journal of the Royal Society, Interface. Vol. 20, 2022076220220762. Published, 02/01/2023.
• Tong D & Soley N (2023). Integrin αIIbβ3 intermediates: From molecular dynamics to adhesion assembly. Biophysical journal. Vol. 122, 533543533-543. Published, 02/01/2023.
• Chen Y & Brasch J (2021). Computational model of E-cadherin clustering under force. Biophysical journal. Vol. 120, 4944-4954. Published, 12/01/2021.
• Chen Y & Brasch J (2021). Computational model of E-cadherin clustering under force. Biophysical journal. Vol. 120, 494449544944-4954. Published, 12/01/2021.
• Driscoll TP, Bidone TC & Ahn SJ (2021). Integrin-based mechanosensing through conformational deformation. Biophysical journal. Vol. 120, 4349-4359. Published, 11/01/2021.
• Driscoll TP, Bidone TC & Ahn SJ (2021). Integrin-based mechanosensing through conformational deformation. Biophysical journal. Vol. 120, 434943594349-4359. Published, 11/01/2021.
• Homa KE, Zsolnay V, Anderson CA & O'Connell ME (2021). Formin Cdc12's specific actin assembly properties are tailored for cytokinesis in fission yeast. Biophysical journal. Vol. 120, 2984-2997. Published, 08/01/2021.
• Homa KE, Zsolnay V, Anderson CA & O'Connell ME (2021). Formin Cdc12's specific actin assembly properties are tailored for cytokinesis in fission yeast. Biophysical journal. Vol. 120, 298429972984-2997. Published, 08/01/2021.
• Bidone TC (2020). INSIGHTS INTO THE MECHANICS OF CYTOKINETIC RING ASSEMBLY USING 3D MODELING. International Mechanical Engineering Congress and Exposition : [proceedings]. International Mechanical Engineering Congress and Exposition. Vol. 9. Published, 10/01/2020.
• Campbell S & Amin MA (2020). Computational model demonstrates that Ndc80-associated proteins strengthen kinetochore-microtubule attachments in metaphase. Cytoskeleton (Hoboken, N.J.). Vol. 76, 549561549-561. Published, 09/01/2020.
• Bidone TC, Polley A, Jin J, Driscoll T, Iwamoto DV, Calderwood DA, Schwartz MA & Voth GA (2020). Coarse-Grained Simulation of Full-Length Integrin Activation. Biophysical journal. Vol. 116, 1000-1010. Published, 04/01/2020.
• Bidone TC, Polley A, Jin J & Driscoll T (2020). Coarse-Grained Simulation of Full-Length Integrin Activation. Biophysical journal. Vol. 116, 100010101000-1010. Published, 04/01/2020.
• Campbell S, Amin MA, Varma D & Bidone TC (2019). Computational model demonstrates that Ndc80-associated proteins strengthen kinetochore-microtubule attachments in metaphase. Cytoskeleton (Hoboken, N.J.). Vol. 76, 549-561. Published, 12/01/2019.
• Bidone TC, Tang H & Vavylonis D (2019). INSIGHTS INTO THE MECHANICS OF CYTOKINETIC RING ASSEMBLY USING 3D MODELING. International Mechanical Engineering Congress and Exposition : [proceedings]. International Mechanical Engineering Congress and Exposition. Vol. 9. Published, 11/01/2019.
• Harker AJ, Katkar HH, Bidone TC, Aydin F, Voth GA, Applewhite DA & Kovar DR (2019). Ena/VASP processive elongation is modulated by avidity on actin filaments bundled by the filopodia cross-linker fascin. Molecular biology of the cell. Vol. 30, 851-862. Published, 09/01/2019.
• Harker AJ, Katkar HH & Bidone TC (2019). Ena/VASP processive elongation is modulated by avidity on actin filaments bundled by the filopodia cross-linker fascin. Molecular biology of the cell. Vol. 30, 851862851-862. Published, 09/01/2019.
• Oakes PW, Bidone TC, Beckham Y & Skeeters AV (2018). Lamellipodium is a myosin-independent mechanosensor. Proceedings of the National Academy of Sciences of the United States of America. Vol. 115, 264626512646-2651. Published, 09/01/2018.
• Oakes PW, Bidone TC, Beckham Y, Skeeters AV, Ramirez-San Juan GR, Winter SP, Voth GA & Gardel ML (2018). Lamellipodium is a myosin-independent mechanosensor. Proceedings of the National Academy of Sciences of the United States of America. Vol. 115, 2646-2651. Published, 09/01/2018.
• Zhang D (2017). ER-PM Contacts Define Actomyosin Kinetics for Proper Contractile Ring Assembly. Current biology : CB. Vol. 26, 647653647-53. Published, 01/01/2017.
• Tang H (2017). Computational model of polarized actin cables and cytokinetic actin ring formation in budding yeast. Cytoskeleton (Hoboken, N.J.). Vol. 72, 517533517-33. Published, 01/01/2017.
• Zhang D, Bidone TC & Vavylonis D (2017). ER-PM Contacts Define Actomyosin Kinetics for Proper Contractile Ring Assembly. Current biology : CB. Vol. 26, 647-53. Published, 01/01/2017.
• Tang H, Bidone TC & Vavylonis D (2017). Computational model of polarized actin cables and cytokinetic actin ring formation in budding yeast. Cytoskeleton (Hoboken, N.J.). Vol. 72, 517-33. Published, 01/01/2017.
• Bidone TC & Kim T (2016). Multiscale impact of nucleotides and cations on the conformational equilibrium, elasticity and rheology of actin filaments and crosslinked networks. Biomechanics and modeling in mechanobiology. Vol. 14, 114311551143-55. Published, 06/01/2016.
• Bidone TC, Kim T, Deriu MA, Morbiducci U & Kamm RD (2016). Multiscale impact of nucleotides and cations on the conformational equilibrium, elasticity and rheology of actin filaments and crosslinked networks. Biomechanics and modeling in mechanobiology. Vol. 14, 1143-55. Published, 06/01/2016.
• Bidone TC (2015). Dynamic network morphology and tension buildup in a 3D model of cytokinetic ring assembly. Biophysical journal. Vol. 107, 261826282618-28. Published, 08/01/2015.
• Bidone TC, Tang H & Vavylonis D (2015). Dynamic network morphology and tension buildup in a 3D model of cytokinetic ring assembly. Biophysical journal. Vol. 107, 2618-28. Published, 08/01/2015.
• Borau C, Kim T, Bidone T, García-Aznar JM & Kamm RD (2013). Dynamic mechanisms of cell rigidity sensing: insights from a computational model of actomyosin networks. PloS one. Vol. 7, e49174. Published, 04/01/2013.
• Deriu MA, Shkurti A, Paciello G & Bidone TC (2012). Multiscale modeling of cellular actin filaments: from atomistic molecular to coarse-grained dynamics. Proteins. Vol. 80, 159816091598-609. Published, 10/01/2012.
• Deriu MA, Shkurti A, Paciello G, Bidone TC, Morbiducci U, Ficarra E, Audenino A & Acquaviva A (2012). Multiscale modeling of cellular actin filaments: from atomistic molecular to coarse-grained dynamics. Proteins. Vol. 80, 1598-609. Published, 10/01/2012.
• Deriu MA, Bidone TC & Mastrangelo F (2011). Biomechanics of actin filaments: a computational multi-level study. Journal of biomechanics. Vol. 44, 630636630-6. Published, 06/01/2011.
• Deriu MA, Bidone TC, Mastrangelo F, Di Benedetto G, Soncini M, Montevecchi FM & Morbiducci U (2011). Biomechanics of actin filaments: a computational multi-level study. Journal of biomechanics. Vol. 44, 630-6. Published, 06/01/2011.

Presentations

• Invited lecture at 2022 International School of Statistical Physics. Erice School: Exploring and quantifying rough free energy landscapes, Ettore Majorana Foundation and Center for Scientific Culture, Erice, Italy. Invited Talk/Keynote, Presented, 09/27/2022.
• Podium presentation at the Bioscience symposium. Biological Chemistry Program, University of Utah. Invited Talk/Keynote, Presented, 09/13/2022.
• Invited department seminar: Biomedical engineering seminar, North Carolina Agricultural & Technical State University, Greensboro. Invited Talk/Keynote, Presented, 09/08/2022.
• Invited talk at 2022 Cytoskeletal Motors, Molecular machines: from biophysics to physiology to disease. Gordon Research Conference. West Dover, VT. Invited Talk/Keynote, Presented, 07/12/2022.
• Invited talk at 2022 Biological membranes and membrane proteins: challenges for theory and experiments. Santa Fe, New Mexico. Invited Talk/Keynote, Presented, 06/20/2022.
• Invited talk at Biophysics at the dawn of exascale computers. Hamburg, Germany,. Invited Talk/Keynote, Presented, 05/16/2022.
• Presentation at the "Research in Progress" Seminar Series, University of Utah. Invited Talk/Keynote, Presented, 06/03/2021.
• Presentation at the Pharmaceutics and Pharmaceutical Seminar Series, University of Utah. Invited Talk/Keynote, Presented, 02/22/2021.
• "Computational modeling and simulations of adhesion receptors" presented at the Huntsman Cancer Institute. Invited Talk/Keynote, Presented, 09/23/2020.
• "International Conference on Mathematical Multiscale Modeling in Biology", Guanacaste, Costa Rica. Invited Talk/Keynote, Presented, 10/23/2019.
• "Biology and Physics confront Cell-Cell adhesions", Aussois, France. Invited Talk/Keynote, Presented, 10/15/2019.
• Presentation at the Mathematics Biology Seminar Series, University of Utah. Invited Talk/Keynote, Presented, 09/25/2019.
• "Mathematics and Computer Science in Modeling and Understanding of Structure and Dynamics of Biomolecules", Bandd International Research Station for Mathematics Innovation and Discovery. Invited Talk/Keynote, Presented, 08/12/2019.
• "Model of cell adhesions assembly from transmembrane integrins" presented at the conference "Biological Membranes and Membrane Proteins". Invited Talk/Keynote, Presented, 06/12/2019.

Research Groups

• Tomasz Skora, Postdoc. 02/06/2023 - present.
• Robert Coffman, Postdoc. 12/27/2022 - present.
• Keith Carney, Technician. 09/19/2022 - present.
• Remi Sondaz, Graduate Student. 08/15/2022 - present.
• Onkar Joshi, Graduate Student. 08/15/2022 - present.
• Reza Kolasangiani, Graduate Student. 08/16/2021 - present.
• Dudu Tong, Postdoc. 04/05/2021 - 12/31/2021.
• Nidhi Soley, Graduate Student. 02/01/2021 - 04/29/2022.
• Yang Chen, Graduate Student. 08/19/2019 - 08/06/2021.
• Yang Chen, Graduate Student. Biomedical Engineering. 08/12/2019 - 08/06/2021.
• William Garrett, Undergraduate Student. 07/08/2019 - 01/20/2020.
• Andrew Cleveland, Undergraduate Student. 06/10/2019 - 05/11/2020.
• Jashan Sandhu, Undergraduate Student. 05/18/2019 - 04/30/2021.
• Alex Fritz, Undergraduate Student. 05/18/2019 - 07/31/2020.
• Samuel Campbell, Undergraduate Student. 02/25/2019 - 12/30/2022.
• Guy Watson, Graduate Student. 02/25/2019 - 05/28/2019.
• Hongbin Zhang, Graduate Student. 02/25/2019 - 12/31/2020.