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Adjunct Associate Professor, Human Genetics
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Utah Science, Technology, and Research (USTAR) Associate Professor, Scientific Computing and Imaging (SCI) Institute
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Investigator, and Member of the Cancer Control and Population Sciences Program, Huntsman Cancer Institute (HCI)
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Chief Technology Officer (CTO) and Co-Founder, Eigengene, Inc.
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Associate Professor, Biomedical Engineering
Professional Service
- Invited Co-Organizer, Symposium.
National Cancer Institute (NCI) Physical Sciences in Oncology (Rockville, MD).
09/2022 - 09/2022
- Invited Mentor.
International High-Performance Computing (HPC) Summer School on HPC Challenges in Computational Sciences (Athens, Greece).
06/2022 - 06/2022
- Invited Member, Program Committee.
“6th NCI Computational Approaches for Cancer Workshop,“ Supercomputing 2020 (SC20) Virtual.
11/2020 - 11/2020
- Invited Co-Organizer, Virtual Symposium.
Decade of the Physical Sciences in Oncology Network (PS-ON) at the NCI Virtual Symposium.
09/2020 - 09/2020
- Invited Co-Chair and Co-Organizer.
Educational Session, “Artificial Intelligence and Machine Learning from Research to the Cancer Clinic,“ 2020 American Association for Cancer Research (AACR) Virtual Annual Meeting II; https://www.abstractsonline.com/pp8/#!/9045/session/250.
06/2019 - 04/2020
- Invited Co-Organizer, Symposium.
NCI Physical Sciences in Oncology (Minneapolis, MN).
09/2019 - 09/2019
- Appointed Co-Chair.
Steering Committee, PS-ON, NCI, NIH; https://physics.cancer.gov/network/.
01/2019 - 12/2019
- Appointed Member.
Scientific Review Panel, “Emerging Questions in Cancer Systems Biology,“ NCI, NIH.
11/2018 - 11/2018
- Invited Panelist.
International Conference Panel, “Physical Sciences in Oncology,“ 2018 Biomedical Engineering Society (BMES) Annual Meeting (Atlanta, GA).
10/2018 - 10/2018
- Invited Organizer.
Three-Session Minisymposium, “Discovery from Data,“ 2018 Society for Industrial and Applied Mathematics (SIAM) Conference on Applied Linear Algebra (Hong Kong, China); https://alterlab.org/announcements/Ponnapalli_Alter_SIAM-ALA_2018_Discovery_from_Data_Minisymposium.pdf.
05/2018 - 05/2018
- Invited Mentor.
International HPC Summer School on HPC Challenges in Computational Sciences (Boulder, Colorado).
06/2017 - 06/2017
- Appointed Member.
Scientific Review Panel, “Emerging Questions in Cancer Systems Biology,“ NCI, NIH.
03/2017 - 03/2017
- Invited Panelist.
International Association Panel, “Provocative Questions for Medical Physics in Oncology,“ American Association of Physicists in Medicine (AAPM) (Boston, MA).
10/2016 - 10/2016
- Invited Mentor.
International HPC Summer School 2016 on HPC Challenges in Computational Sciences (Ljubljana, Slovenia).
06/2016 - 06/2016
- Appointed Member.
Scientific Review Panel, “Genomic Data Analysis Network,” NCI, NIH.
06/2016 - 06/2016
- Appointed Member.
Steering Committee, PS-ON, NCI, NIH; https://physics.cancer.gov/network/.
09/2015 - present
- Invited Mentor.
International HPC Summer School on HPC Challenges in Computational Sciences (Toronto, Canada).
06/2015 - 06/2015
- Invited Co-Organizer and Panelist.
International Conference Panel, “Translational Bioinformatics,” 5th Association for Computing Machinery (ACM) Conference on Bioinformatics, Computational Biology and Health Informatics (ACM-BCB) (Newport Beach, CA); https://cse.buffalo.edu/ACM-BCB2014/panel.html.
09/2014 - 09/2014
- Invited Organizer.
Three-Session Minisymposium, “Discovery from Data”:
”I. Mathematical Patterns in Nature;” http://meetings.siam.org/sess/dsp_programsess.cfm?SESSIONCODE=18977
“II. Cancer Genomic Signals and Systems;” http://meetings.siam.org/sess/dsp_programsess.cfm?SESSIONCODE=18981
and “III. Decompositions for Big Data Applications;” http://meetings.siam.org/sess/dsp_programsess.cfm?SESSIONCODE=18983
2014 SIAM Annual Meeting (Chicago, IL).
07/2014 - 07/2014
- Invited Mentor.
International HPC Summer School 2014 on HPC Challenges in Computational Sciences (Budapest, Hungary).
06/2014 - 06/2014
- Appointed Member.
Scientific Review Panel, “National Centers for Systems Biology,“ National Institute of General Medical Sciences (NIGMS), NIH.
03/2014 - 03/2014
- Invited Chair and Organizer.
Track, “Bioinformatics, Computational and Systems Biology,” 2013 BMES Annual Meeting (Seattle, WA);
https://alterlab.org/announcements/Alter_BMES_2013_Bioinformatics,_Computational_and_Systems_Biology_Platform_Sessions.pdf.
09/2013 - 09/2013
- Invited Participant.
NSF/Japan Society for the Promotion of Science (JSPS) Connections 2013 Symposium (Washington, DC).
07/2013 - 07/2013
- Appointed Member.
Scientific Review Panel, “National Centers for Systems Biology,“ NIGMS, NIH.
03/2013 - 03/2013
- Appointed Member.
Scientific Review Panel, “National Centers for Systems Biology,“ NIGMS, NIH.
04/2012 - 04/2012
- Invited International Reviewer.
Israel Science Foundation (ISF), Israel.
04/2011 - present
- Appointed Member.
Scientific Review Panel, “National Centers for Systems Biology,“ NIGMS, NIH.
03/2011 - 03/2011
- Invited Participant.
Workshop, “Future Directions in Tensor-Based Computation and Modeling,“ NSF.
02/2009 - 02/2009
- Invited Participant.
Planning Meeting, “The Cancer Genome Atlas (TCGA) Data Portal,“ National Human Genome Research Institute (NHGRI), NIH.
01/2008 - 01/2008
- Appointed Member.
Scientific Review Panels, e.g., Faculty Early Career Development (CAREER) Award Panel and Graduate Research Fellowships Program (GRFP) Panel, NSF.
12/2007 - present
- Appointed Member.
Scientific Review Panels, e.g., “Genomes to Life,” DOE.
04/2005 - present
- Invited International Reviewer.
Research Foundation Flanders (FWO), Belgium.
02/2005 - present
- Invited Participant.
Planning Meeting, “A Vision for the Future of Genomics Research,” NHGRI, NIH;
https://genome.gov/11006874/vision-acknowledgements.
12/2001 - 12/2001
Honors & Awards
- Faculty Early Career Development (CAREER) Award, Division of Mathematical Sciences (DMS), NSF.
08/2009
- 2005 Linear Algebra and its Applications (LAA) Lecture, International Linear Algebra Society (ILAS); https://alterlab.org/in_the_news/Alter_ILAS_Bulletin_2005_Feature.pdf.
06/2005
- Individual Mentored Research Scientist Development Award in Genomic Research and Analysis, National Human Genome Research Institute (NHGRI), NIH.
04/2000
- Sloan Foundation/DOE Postdoctoral Fellowship in Computational Molecular Biology.
09/1999
- Outstanding Doctoral Thesis Research in Atomic, Molecular, or Optical Physics (DAMOP) Award Finalist, American Physical Society (APS);
https://alterlab.org/in_the_news/Ripin_APS_News_1998_Feature.pdf.
04/1998
Internal Service
- Member, Seed Grant Review Committee.
10/2021 - 02/2022.
College service.
In the Media
- Mention: Among the most shared Applied Physics Letters (APL) Bioengineering research as of 2021. 10/2021.
https://aip-info.org/1XPS-7KD96-527719389D75CF2AOL...
- Press Release: J. Kiefer, "Genome-Wide Pattern Found in Tumors from Brain Cancer Patients Predicts Life Expectancy," American Association for the Advancement of Science (AAAS) EurekAlert! (May 15, 2020). 05/2020.
https://eurekalert.org/news-releases/477030
- Mention: Among the top 10 most downloaded Applied Physics Letters (APL) Bioengineering articles of 2019. 05/2019.
https://aip-info.org/1XPS-6A0AU-C5ITTQWO7B/cr.aspx
- Feature: A. J. Engler and D. E. Discher, “Rationally Engineered Advances in Cancer Research,“ Applied Physics Letters (APL) Bioengineering 2 (3), Special Topic: Bioengineering of Cancer preface 031601 (September 2018). 09/2018.
https://aip-info.org/1XPS-5VDRA-50C9RKAB1F/cr.aspx
- Mention: Among the top 10% most cited Public Library of Science (PLoS) One articles as of 2017. 06/2017.
- Feature: F. Pavlou, “Big Data, Hidden Knowledge,“ The Pathologist (June 15, 2015). 04/2015.
https://thepathologist.com/issues/0615/big-data-hi...
- Feature: R. Atkins, “Calculating Cancer Cures,“ National Academy of Engineering (NAE) Innovation Podcast and Radio Series (April 19, 2015). 04/2015.
https://alterlab.org/in_the_news/Atkins_NAE_WTOP_R...
- Feature: B. Maffly, “U. Researchers’ Mathematical Models Could Provide Better Ovarian Cancer Treatment, Outcomes,“ Salt Lake Tribune (April 15, 2015). 04/2015.
https://archive.sltrib.com/article.php?id=2399606&...
- Press Release: J. Kiefer, “New Method Increases Accuracy of Ovarian Cancer Prognosis and Diagnosis,“ American Association for the Advancement of Science (AAAS) EurekAlert! (April 15, 2015). 04/2015.
https://eurekalert.org/news-releases/866753
- Recommendation: M. Méchali, Faculty Opinions recommendation 1728974 (February 2010). 02/2010.
https://facultyopinions.com/prime/1728974#tab=abst...
- Feature: S. N. Dwivedi, “J. A. Drake and O. Alter, Rao Conference at the Interface between Statistics and the Sciences (Hyderabad, India, December 30, 2009 – January 2, 2010), Rao Best Poster Prize,” International Biometric Society (IBS) Bulletin 27 (1), pp. 2–14 (January–March 2010);. 12/2009.
https://alterlab.org/in_the_news/Dwivedi_IBS_Bulle...
- Press Release: B. Rische, "Mathematical Modeling Correctly Predicts Previously Unknown Biological Mechanism of Regulation," American Association for the Advancement of Science (AAAS) EurekAlert! (October 13, 2009). 10/2009.
https://eurekalert.org/news-releases/815594
- Excerpt: O. Alter, “2005 Linear Algebra and its Applications (LAA) Lecture,“ IMAGE: International Linear Algebra Society (ILAS) Bulletin 35, pp. 2–14 (December 2005). 12/2005.
https://alterlab.org/in_the_news/Alter_ILAS_Bullet...
- Feature: M. E. Kilmer and C. D. Moravitz Martin, “Decomposing a Tensor,“ Society for Industrial and Applied Mathematics (SIAM) News 37 (9), (November 2004). 11/2004.
https://alterlab.org/in_the_news/Kilmer_Moravitz-M...
- Feature: J. Wixon and J. Ashurst, “Genome Informatics,“ Computational Functional Genomics 4 (5), pp. 509–514 (October 2003). 10/2003.
https://alterlab.org/in_the_news/Wixon_Ashurst_Com...
- Commentary: L. Y. Dirix and A. T. van Oosterom, “Gene-Expression Profiling to Classify Soft-Tissue Sarcomas,“ Lancet 359 (9314), pp. 1263–1264 (April 2002). 04/2002.
https://alterlab.org/in_the_news/Dirix_Oosterom_La...
- Feature: B. H. Ripin, “O. Alter, Outstanding Doctoral Thesis Research in Atomic, Molecular, or Optical Physics (DAMOP) Award Finalist,” American Physical Society (APS) News (August–September 1998). 08/1998.
https://alterlab.org/in_the_news/Ripin_APS_News_19...