Publications

  • Jessica D Blum & Justin Beiriger, Dillan F Villavisanis, Carrie Morales, Daniel Y Cho, Wenzheng Tao, (2023). Machine Learning in Metopic Craniosynostosis: Does Phenotypic Severity Predict Long-Term Esthetic Outcome?. Wolters Kluwer. 58-64. Published, 01/30/2023.
    https://www.ingentaconnect.com/content/wk/scs/2023...
  • Erin E Anstadt & , Wenzheng Tao, Ejay Guo, Lucas Dvoracek, Madeleine K Bruce, Philip J Grosse, Li Wang, Ladislav Kavan, Ross Whitaker, Jesse A Goldstein (2022). Quantifying the Severity of Metopic Craniosynostosis Using Unsupervised Machine Learning. Wolters Kluwer. Vol. 11, 396-403. Published, 11/18/2022.
    https://scholar.google.com/citations?view_op=view_...
  • Jessica D Blum & Justin Beiriger, Christopher Kalmar, Robert A Avery, Shih-Shan Lang, Dillan F Villavvisanis, Liana Cheung, Daniel Y Cho, Wenzheng Tao, Ross Whitaker, Scott P Bartlett, Jesse A Taylor, Jesse A Goldstein, Jordan W Swanson (2022). Relating metopic craniosynostosis severity to intracranial pressure. Wolters Kluwer. Vol. 33, 2372-2378. Published, 11/14/2022.
  • Surojit Saha & Shireen Elhabian, Ross Whitaker (2022). GENs: generative encoding networks. Machine Learning. 4003-4038. Published, 11/2022.
  • Thu T Nguyen & Quynh C Nguyen, Anna D Rubinsky, Tolga Tasdizen, Amir Hossein Nazem Deligani, Pallavi Dwivedi, Ross Whitaker, Jessica D Fields, Mindy C DeRouen, Heran Mane, Courtney R Lyles, Kim D Brunisholz, Kirsten Bibbins-Domingo (2022). Google street view-derived neighborhood characteristics in california associated with coronary heart disease, hypertension, diabetes. International journal of environmental research and public health. Vol. 18. Published, 10/03/2022.
    https://scholar.google.com/citations?view_op=view_...
  • Xiaohe Yue & Anne Antonietti, Mitra Alirezaei, Tolga Tasdizen, Dapeng Li, Leah Nguyen, Heran Mane, Ab (2022). Using convolutional neural networks to derive neighborhood built environments from Google Street View images and examine their associations with health outcomes. International Journal of Environmental Research and Public Health. Vol. 19, 12095. Published, 09/24/2022.
  • Alessandro Ferrero & Beatrice Knudsen, Deepika Sirohi, Ross Whitaker (2022). A Pathologist-Informed Workflow for Classification of Prostate Glands in Histopathology. Medical Optical Imaging and Virtual Microscopy Image Analysis: First International Workshop, MOVI 2022. 53-62. Published, 09/18/2022.
  • Surojit Saha & Ouk Choi, Ross Whitaker (2022). Few-Shot Segmentation of Microscopy Images Using Gaussian Process. Medical Optical Imaging and Virtual Microscopy Image Analysis: First International Workshop, MOVI 2022. 94-104. Published, 09/18/2022.
  • Atkins PR, Agrawal P, Mozingo JD & Uemura K (2022). Prediction of femoral head coverage from articulated statistical shape models of patients with developmental dysplasia of the hip. Journal of orthopaedic research : official publication of the Orthopaedic Research Society. Vol. 40, 211321262113-2126. Published, 08/01/2022.
  • Rauff A & Timmins LH (2022). A Nonparametric Approach for Estimating Three-Dimensional Fiber Orientation Distribution Functions (ODFs) in Fibrous Materials. IEEE transactions on medical imaging. Vol. 41, 446455446-455. Published, 04/01/2022.
  • Madeleine K Bruce & Wenzheng Tao, Justin Beiriger, Cameron Christensen, Miles J Pfaff, Ross Whitaker, Jesse A Goldstein (2022). 3D Photography to Quantify the Severity of Metopic Craniosynostosis. The Cleft Palate-Craniofacial Journal. Published, 03/21/2022.
    https://journals.sagepub.com/doi/abs/10.1177/10556...
  • Quynh C Nguyen & Tom Belnap, Pallavi Dwivedi, Amir Hossein Nazem Deligani, Abhinav Kumar, Dapeng Li, Ross Whitaker, Jessica Keralis, Heran Mane, Xiaohe Yue, Thu T Nguyen, Tolga Tasdizen, Kim D Brunisholz (2022). Google street view images as predictors of patient health outcomes, 2017–2019. Big data and cognitive computing. Vol. 6. Published, 01/27/2022.
  • Justin Beiriger & Madeleine Bruce, Wenzheng Tao, Ross Whitaker, Jesse Goldstein (2022). CRANIORATE: AN IMAGE-BASED, DEEP-PHENOTYPING ANALYSIS TOOLSET, REPOSITORY, AND ONLINE CLINICIAN INTERFACE FOR CRANIOSYNOSTOSIS. Plastic and Reconstructive Surgery. Vol. 10. Published, 01/04/2022.
  • Alexandra Jun & Jacob Dinis, Sacha C Hauc, Madeleine K Bruce, Kitae E Park, Wenzheng Tao, Cameron Christensen, Ross Whitaker, Jesse A Goldstein, Michael Alperovich (2021). Validation of artificial intelligence severity assessment in metopic craniosynostosis. he Cleft Palate-Craniofacial Journal. Published, 11/17/2021.
    https://scholar.google.com/citations?view_op=view_...
  • Bhalodia R (2021). Self-Supervised Discovery of Anatomical Shape Landmarks. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Vol. 12264, 627-638. Published, 10/01/2021.
  • Agrawal P & Mozingo JD (2021). Combined Estimation of Shape and Pose for Statistical Analysis of Articulating Joints. Shape in Medical Imaging : International Workshop, ShapeMI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4, 2020, Proceedings. Vol. 12474, 111-121. Published, 10/01/2021.
  • Bhalodia R (2021). Self-Supervised Discovery of Anatomical Shape Landmarks. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Vol. 12264, 627-638. Published, 10/01/2021.
  • Agrawal P & Mozingo JD (2021). Combined Estimation of Shape and Pose for Statistical Analysis of Articulating Joints. Shape in Medical Imaging : International Workshop, ShapeMI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4, 2020, Proceedings. Vol. 12474, 111-121. Published, 10/01/2021.
  • Agrawal P & Mozingo JD (2021). Combined Estimation of Shape and Pose for Statistical Analysis of Articulating Joints. Shape in Medical Imaging : International Workshop, ShapeMI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4, 2020, Proceedings. Vol. 12474, 111-121. Published, 10/01/2021.
  • Bhalodia R (2021). Self-Supervised Discovery of Anatomical Shape Landmarks. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Vol. 12264, 627-638. Published, 10/01/2021.
  • Riddhish Bhalodia & Shireen Elhabian, Ladislav Kavan, Ross Whitaker (2021). Leveraging unsupervised image registration for discovery of landmark shape descriptor. Medical image analysis. Vol. 73. Published, 10/01/2021.
  • Wenzheng Tao & Riddhish Bhalodia, Ross Whitaker (2021). A Gaussian Process Model for Unsupervised Analysis of High Dimensional Shape Data. Machine Learning in Medical Imaging: 12th International Workshop, MLMI 2021. Published, 09/27/2021.
    https://scholar.google.com/citations?view_op=view_...
  • Adam Rauff & Lucas H Timmins, Ross T Whitaker, Jeffrey A Weiss (2021). A nonparametric approach for estimating three-dimensional fiber orientation distribution functions (ODFs) in fibrous materials. IEEE Transactions on Medical Imaging. Vol. 41. Published, 09/24/2021.
    https://scholar.google.com/citations?view_op=view_...
  • Agrawal P (2021). An Optimal, Generative Model for Estimating Multi-Label Probabilistic Maps. IEEE transactions on medical imaging. Vol. 39, 2316-2326. Published, 06/01/2021.
  • Agrawal P (2021). An Optimal, Generative Model for Estimating Multi-Label Probabilistic Maps. IEEE transactions on medical imaging. Vol. 39, 2316-2326. Published, 06/01/2021.
  • Kelly KE, Xing WW, Sayahi T & Mitchell L (2021). Community-Based Measurements Reveal Unseen Differences during Air Pollution Episodes. Environmental science & technology. Vol. 55, 120-128. Published, 04/01/2021.
  • Kelly KE, Xing WW, Sayahi T & Mitchell L (2021). Community-Based Measurements Reveal Unseen Differences during Air Pollution Episodes. Environmental science & technology. Vol. 55, 120-128. Published, 04/01/2021.
  • Agrawal, Praful; Mozingo, Joseph D; Elhabian, Shireen Y; Anderson, Andrew E; Whitaker, Ross T (2020). Combined estimation of shape and pose for statistical analysis of articulating joints. Int. Workshop on Shape in Medical Imaging. 111-121. Published, 10/2020.
  • Bhalodia, Riddhish; Kavan, Ladislav; Whitaker, Ross T (2020). Self-supervised discovery of anatomical shape landmarks. Proc. Medical Image Analysis and Computer-Aided Intervention (MICCAI). 627-638. Published, 09/2020.
  • Mullen, Casey; Grineski, Sara; Collins, Timothy; Xing, Wei; Whitaker, Ross; Sayahi, Tofigh; Becnel, (2020). Patterns of distributive environmental inequity under different PM2. 5 air pollution scenarios for Salt Lake County public schools. Environmental Research. Vol. 186. Published, 07/2020.
  • "Mallia, Derek V; Kochanski, Adam K; Kelly, Kerry E; Whitaker, Ross; Xing, Wei; Mitchell, Logan E; J (2020). Evaluating wildfire smoke transport within a coupled fire‐atmosphere model using a high‐density observation network for an episodic smoke event along Utah's Wasatch Front. Journal of Geophysical Research: Atmospheres. Vol. 125. Published, 07/2020.
  • Riddhish Bhalodia, Lucas A Dvoracek, Ali M Ayyash, Ladislav Kavan, Ross Whitaker, Jesse A Goldstein (2020). Quantifying the severity of metopic craniosynostosis: a pilot study application of machine learning in craniofacial surgery. Journal of Craniofacial Surgery. Vol. 31, 697-701. Published, 05/01/2020.
  • Wei Xing, Shireen Elhabian, Robert Kirby, Ross T Whitaker, Shandian Zhe (2020). Infinite ShapeOdds: Nonparametric Bayesian Models for Shape Representations. Proceedings of the AAAI Conference on Artificial Intelligence. Vol. 34, 6462-6469. Published, 04/03/2020.
  • Praful Agarwal, Andrew E Anderson, Ross T Whitaker (2020). Combined Estimation of Shape and Pose for Statistical Analysis of Articulating Joints. Shape in Medical Imaging: International Workshop, ShapeMI 2020. Published, 02/04/2020.
  • Praful Agrawal, Ross T Whitaker, Shireen Y Elhabian (2020). An Optimal, Generative Model for Estimating Multi-Label Probabilistic Maps. IEEE Transactions on Medical Imaging. Vol. 39, 2316-2326. Published, 01/23/2020.
  • Ross Whitaker, Ingrid Hotz (2020). Transformations, Mappings, and Data Summaries. (pp. 121-157). Foundations of Data Visualization, Springer. Published, 01/01/2020.
  • Mullen, Casey; Grineski, Sara; Collins, Timothy; Xing, Wei; Whitaker, Ross; Sayahi, Tofigh; Becnel, (2020). ,Patterns of distributive environmental inequity under different PM2. 5 air pollution scenarios for Salt Lake County public schools. Environmental Research. Vol. 186. Published, 01/2020.
  • Mehran Javanmardi, Dina Huang, Pallavi Dwivedi, Sahil Khanna, Kim Brunisholz, Ross Whitaker, Quynh N (2019). Analyzing associations between chronic disease prevalence and neighborhood quality through Google Street View images. IEEE Access. Vol. 8, 6407-6416. Published, 12/16/2019.
  • Jimmy Moore, Wei Xing, Matthew Dailey, Katrina Le, Thomas Becnel, Pascal Goffin, Miriah Meyer, Pierr (2019). Engaging Middle and High School Students in Hypothesis Generation Using a Citizen-Scientist Network of Air Quality Sensors. 2019 AIChE Annual Meeting. Published, 11/13/2019.
  • Sharmin Sultana, Praful Agrawal, Shireen Elhabian, Ross Whitaker, Jason E Blatt, Benjamin Gilles, Ju (2019). Medial axis segmentation of cranial nerves using shape statistics-aware discrete deformable models. International journal of computer assisted radiology and surgery. Vol. 14, 1955-1967. Published, 11/01/2019.
  • Bhalodia, Riddhish and Elhabian, Shireen Y and Kavan, Ladislav and Whitaker, Ross T (2019). A Cooperative Autoencoder for Population-Based Regularization of CNN Image Registration. Proc. International Conference on Medical Image Computing and Computer-Assisted Intervention (Springer). 391--400. Published, 10/25/2019.
  • Riddhish Bhalodia, Lucas A Dvoracek, Ali M Ayyash, Ladislav Kavan, Ross Whitaker, Jesse A Goldstein, (2019). Quantifying the Severity of Metopic Craniosynostosis: A Pilot Study in Application of Advanced Machine Learning in Craniofacial Surgery. Plastic and Reconstructive Surgery. Vol. 7. Published, 09/21/2019.
  • Sultana, Sharmin and Agrawal, Praful and Elhabian, Shireen and Whitaker, Ross and Blatt, Jason E and (2019). Medial axis segmentation of cranial nerves using shape statistics-aware discrete deformable model. International Journal of Computer Assisted Radiology and Surgery (Springer). Vol. 14(11), 1955-1967. Published, 06/01/2019.
  • Nevell, Lisa and Cates, Joshua and Prajapati, Suresh and Nelon, Laura D and Chang, Jerry and Randol (2019). Particle Based Modeling (PBM) Geometric Morphometric Analysis of the basioccipital bone in Pax7-deficient mice. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY (WILEY). Vol. 168, 175. Published, 03/01/2019.
  • @article{perry2019allocation, title={Allocation strategies for high fidelity models in the multifidelity regime}, author={Perry, Daniel J and Kirby, Robert M and Narayan, Akil and Whitaker, Ross T}, journal={SIAM/ASA Journal on Uncertainty Quantification}, volume={7}, number={1}, pages={203--231}, year={2019}, publisher={Society for Industrial and Applied Mathematics} }. Published, 01/01/2019.
  • Moore, Jimmy and Xing, Wei and Dailey, Matthew and Le, Katrina and Becnel, Tom and Goffin, Pascal an (2019). Engaging Middle and High School Students in Hypothesis Generation Using a Citizen-Scientist Network of Air Quality Sensors. Proc. 2019 AIChE Annual Meeting. Published, 01/01/2019.
  • Javanmardi, Mehran and Huang, Dina and Dwivedi, Pallavi and Khanna, Sahil and Brunisholz, Kim and Wh (2019). Analyzing Associations Between Chronic Disease Prevalence and Neighborhood Quality Through Google Street View Images. IEEE Access. Published, 01/01/2019.
  • Anupama Goparaju, & Ibolya Csecs, Alan Morris, Evgueni Kholmovski, Nassir Marrouche, Ross Whitaker, Sh (2018). On the Evaluation and Validation of Off-the-Shelf Statistical Shape Modeling Tools: A Clinical Application. Springer. Published, 09/20/2018.
  • Riddhish Bhalodia & , Shireen Y Elhabian, Ladislav Kavan, Ross T Whitaker (2018). International Workshop on Shape in Medical Imaging. Springer. Published, 09/20/2018.
  • Tim Sodergren & Riddhish Bhalodia, Ross Whitaker, Joshua Cates, Nassir Marrouche, Shireen Elhabian (2018). Mixture Modeling of Global Shape Priors and Autoencoding Local Intensity Priors for Left Atrium Segmentation. Springer. Published, 09/16/2018.
  • Mukund Raj & Ross T Whitaker (2018). Visualizing Multidimensional Data with Order Statistics. Computer Graphics Forum. Vol. 37, 277-287. Published, 06/01/2018.
  • Mahsa Mirzargar & Ross T Whitaker (2018). Representative Consensus from Limited‐Size Ensembles. Computer Graphics Forum. Vol. 37, 13-22. Published, 06/01/2018.
  • Liyun Tu & Martin Styner, Jared Vicory, Shireen Elhabian, Rui Wang, Junpyo Hong, Beatriz Paniagua, Juan C Prieto, Dan Yang, Ross Whitaker, Stephen M Pizer (2018). Skeletal shape correspondence through entropy. IEEE Transactions on Medical Imaging. Vol. 37, 1-11. Published, 01/01/2018.
  • P. Atkins, S. Elhabian, P. Agrawal, M. Harris, R. Whitaker, J. Weiss, C. Peters, A. Anderson (2017). Quantitative comparison of cortical bone thickness using correspondence-based shape modeling in patients with cam femoroacetabular impingement. J. of Orthopaedic Res. Vol. 35, 1743-1753. Published, 12/31/2017.
  • G. Veni, S. Elhabian, R. Whitaker (2017). ShapeCut: Bayesian surface estimation using shape-driven graph. Medical Image Analysis. Vol. 7. Published, 12/31/2017.
  • R. Kirby, R. Whitaker, (2017). Dense depth maps from correspondences derived from perceived motion. J. of Electronic Imaging. Vol. 26. Published, 12/31/2017.
  • J. Cates, L. Nevell, S. Prajapati, L. Nelon, J. Chang, M. Randolph, B. Wood, C. Keller, R. Whitaker (2017). Shape analysis of the basioccipital bone in Pax7-deficient mice. Scientific Reports. Vol. 7. Published, 12/31/2017.
  • S. Elhabian, R. Whitaker (2017). From Label Maps to Generative Shape Models: A Variational Bayesian Learning Approach. Proc. Int. Conf. on Information Processing in Med. Imaging. 93-105. Published, 12/31/2017.
  • D. Perry, B. Osting, R. Whitaker (2017). Nystrom Sketches. Proc. Joint European Conf. on Machine Learning and Knowledge Discovery in Databases. 427-442. Published, 12/31/2017.
  • P. Agrawal, R. Whitaker, S. Elhabian (2017). Learning Deep Features for Automated Placement of Correspondence Points on Ensembles of Complex Shapes. Proc. Int. Conf. on Med. Image Computing and Comp-Assisted Intervention. 185-193. Published, 12/31/2017.
  • M. Raj, R. Whitaker (2017). Anisotropic Radial Layout for Visualizing Centrality and Structure in Graphs. Proc. 25th Int. Sym. on Graph Drawing and Network Visualization. arXiv:1709.00804. Published, 12/31/2017.
  • S. Elhabian, R. Whitaker (2017). ShapeOdds: Variational Bayesian Learning of Generative Shape Models. Proc. IEEE Conf. on Comp. Vision and Pattern Recognition. Published, 12/31/2017.
  • J.S. Preston, S. Joshi, R. Whitaker, ``Deformation Estimation with Automatic Sliding Boundary Computation'', Int. Conf. on Medical Image Computing and Computer-Assisted Intervention, pp. 72--80, 2016. Published, 12/2016.
  • S. Sultana, P. Agrawal, S. Elhabian, R. Whitaker, T. Rashid, J. Blatt, J. Cetas, M. Audette, ``Towards a Statistical Shape-Aware Deformable Contour Model for Cranial Nerve Identification'', Proc. Work. on Clinical Image-Based Procedures, pp. 68--76, 2016. Published, 12/2016.
  • D. Perry, R. Whitaker, ``Augmented Leverage Score Sampling with Bounds'', Proc. European Conf. on Machine Learning and Knowledge Discovery in Databases, pp. 543--558, 2016. Published, 12/2016.
  • P. Atkins, S. Elhabian, P. Agrawal, M. Harris, R. Whitaker, J. Weiss, C. Peters, A. Anderson, "Quantitative comparison of cortical bone thickness using correspondence-based shape modeling in patients with cam femoroacetabular impingement", J. of Orthopaedic Research, 2016. Published, 12/2016.
  • L. Tu, J. Vicory, S. Elhabian, B. Paniagua, J. C. Prieto, J. Damon, R. Whitaker, M. Styner, S. Pizer, "Entropy-based correspondence improvement of interpolated skeletal models'' Computer Vision and Image Understanding, Vol. 151, pp. 72-79, 2016. Published, 12/2016.
  • B. Bagley, S Sastry, R Whitaker, ``A Marching-tetrahedra Algorithm for Feature-preserving Meshing of Piecewise-smooth Implicit Surfaces'' Procedia Engineering, Vol. 163, pp 62-174, 2016. Published, 12/2016.
  • A. Anderson, P. Atkins, P. Agrawal, S. Elhabian, R. Whitaker, J. Weiss, C. Peters, S. Aoki, ``Which Radiographic Measurements Best Identify Anatomical Variation in Femoral Head Anatomy - Analysis Using 3D Computed Tomography and Statistical Shape Modeling'', J. of Hip Preservation Surgery, 3(1), pp. 30--45, 2016. Published, 12/2016.
  • R. Kirby, R. Whitaker, ``A novel automated method for doing registration and 3D reconstruction from multi-modal RGB/IR image sequences'', Proc. SPIE Optical Engineering and Applications, pp. 99740O-99740O, 2016. Published, 12/2016.
  • R. Kirby, R. Whitaker, ``3D reconstruction from images taken with a coaxial camera rig'', Proc. SPIE Optical Engineering and Applications, pp. 997106-997106, 2016. Published, 12/2016.
  • I. Oguz, J. Cates, M. Datar, B. Paniagua, P.T. Fletcher, C. Vachet, M. Styner, R. Whitaker, ``Entropy-based particle correspondence for shape populations,'', Int. J. of Comp. Assisted Radiology and Surgery, 11(7), pp. 1221--1232, 2016. Published, 12/2016.
  • M. Raj, M. Mirzargar, R.M. Kirby, R.T. Whitaker, J.S. Preston, ``Evaluating Alignment of Shapes by Ensemble Visualization'', IEEE Computer Graphics and Applications, 36(3), pp. 60--71, 2016. Published, 12/2016.
  • Oguz, Ipek; Cates, Josh; Datar, Manasi; Paniagua, Beatriz; Fletcher, Thomas; Vachet, Clement; Styner, Martin; Whitaker, Ross; ",Entropy-based particle correspondence for shape populations", International journal of computer assisted radiology and surgery, 2015. Published, 12/2015.
    https://scholar.google.com/citations?view_op=view_...
  • Rottman, Caleb; McBride, Lance; Cheryauka, Arvidas; Whitaker, Ross; Joshi, Sarang; "Mobile C-arm 3D Reconstruction in the Presence of Uncertain Geometry", Proc. Medical Image Computing and Computer-Assisted Intervention (MICCAI 2015), pp. 692-699, 2015. Published, 10/2015.
    https://scholar.google.com/citations?view_op=view_...
  • Veni, Gopalkrishna; Elhabian, Shireen Y; Whitaker, Ross T; "A Bayesian formulation of graph-cut surface estimation with global shape priors,"Proc. IEEE 12th International Symposium on Biomedical Imaging", pp. 368-371, 2015. Published, 04/2015.
    https://scholar.google.com/citations?view_op=view_...
  • Liu, Le; Mirzargar, Mahsa; Kirby, Robert M; Whitaker, Ross; House, Donald H; "Visualizing Time?Specific Hurricane Predictions, with Uncertainty, from Storm Path Ensembles", Computer Graphics Forum, 34, 3, pp. 371-380, 2015. Published, 03/2015.
    https://scholar.google.com/citations?view_op=view_...
  • Raj, Mukund; Mirzargar, Mahsa; Kirby, Robert; Whitaker, Ross T; Preston, J Samuel; "Evaluating Alignment of Shapes by Ensemble Visualization", IEEE computer graphics and applications, 2015. Published, 01/2015.
    https://scholar.google.com/citations?view_op=view_...
  • Contour Boxplots: A Method for Characterizing Uncertainty in Feature Sets from Simulation Ensembles RT Whitaker, M Mirzargar, RM Kirby Visualization and Computer Graphics, IEEE Transactions on 19 (12), 2713-2722. Published, 12/2013.
    http://scholar.google.com/citations?view_op=view_c...
  • Lattice cleaving: Conforming tetrahedral meshes of multimaterial domains with bounded quality JR Bronson, JA Levine, RT Whitaker Proceedings of the 21st International Meshing Roundtable, 191-209. Published, 10/2013.
    http://scholar.google.com/citations?view_op=view_c...
  • Impacts of Boundary Conforming Meshes on Electrical Cardiac Simulation DJ Swenson, JA Levine, JD Tate, RT Whitaker, RS MacLeod Proceedings of the 21st International Meshing Roundtable, 585-602. Published, 10/2013.
  • Statistical shape modeling of cam femoroacetabular impingement MD Harris, M Datar, RT Whitaker, ER Jurrus, CL Peters, AE Anderson Journal of Orthopaedic Research 31 (10), 1620-1626. Published, 10/2013.
  • Geodesic Distances to Landmarks for Dense Correspondence on Ensembles of Complex Shapes M Datar, I Lyu, SH Kim, J Cates, MA Styner, R Whitaker Medical Image Computing and Computer-Assisted Intervention–MICCAI 2013, 19-26. Published, 09/2013.
    http://scholar.google.com/citations?view_op=view_c...
  • Bayesian segmentation of atrium wall using globally-optimal graph cuts on 3D meshes G Veni, Z Fu, SP Awate, RT Whitaker Information Processing in Medical Imaging, 656-667. Published, 06/2013.
    http://scholar.google.com/citations?view_op=view_c...
  • Multi-layer deformation estimation for fluoroscopic imaging JS Preston, C Rottman, A Cheryauka, L Anderton, RT Whitaker, S Joshi Information Processing in Medical Imaging, 123-134. Published, 06/2013.
    http://scholar.google.com/citations?view_op=view_c...
  • A novel framework for the quantitative analysis of high resolution transmission electron micrographs of soot I. Improved measurement of interlayer spacing P Toth, AB Palotas, EG Eddings, RT Whitaker, JAS Lighty Combustion and Flame 160 (5), 909-919. Published, 05/2013.
  • A Fast Iterative Method for Solving the Eikonal Equation on Tetrahedral Domains Z Fu, SIAM Journal on Scientific Computing 35 (5), C473-C494. Published, 05/2013.
    http://scholar.google.com/citations?view_op=view_c...
  • A novel framework for the quantitative analysis of high resolution transmission electron micrographs of soot II. Robust multiscale nanostructure quantification P Toth, AB Palotas, EG Eddings, RT Whitaker, JS Lighty Combustion and Flame 160 (5), 920-932. Published, 05/2013.
  • Targeted intraceptor nanoparticle therapy reduces angiogenesis and fibrosis in primate and murine macular degeneration L Luo, X Zhang, Y Hirano, P Tyagi, P Barabás, H Uehara, TR Miya, ... ACS nano 7 (4), 3264-3275. Published, 04/2013.
    http://scholar.google.com/citations?view_op=view_c...
  • Toward an understanding of the short bone phenotype associated with multiple osteochondromas KB Jones, M Datar, S Ravichandran, H Jin, E Jurrus, R Whitaker, ... Journal of Orthopaedic Research 31 (4), 651-657. Published, 04/2013.
  • Proper ordered meshing of complex shapes and optimal graph cuts applied to atrial-wall segmentation from DE-MRI G Veni, Z Fu, SP Awate, RT Whitaker Biomedical Imaging (ISBI), 2013 IEEE 10th International Symposium on, 1296-1299. Published, 04/2013.
    http://scholar.google.com/citations?view_op=view_c...
  • Morse–Smale Regression S Gerber, O Rübel, PT Bremer, V Pascucci, RT Whitaker Journal of Computational and Graphical Statistics 22 (1), 193-214. Published, 01/2013.
    http://scholar.google.com/citations?view_op=view_c...
  • Regularization-free principal curve estimation S Gerber, R Whitaker The Journal of Machine Learning Research 14 (1), 1285-1302. Published, 01/2013.
    http://scholar.google.com/citations?view_op=view_c...
  • Lattice Cleaving: Conforming Tetrahedral Meshes of Multimaterial Domains with Bounded Quality. Published, 12/2012.
    http://scholar.google.com/citations?view_op=view_c...
  • How Many Templates Does It Take for a Good Segmentation?: Error Analysis in Multiatlas Segmentation as a Function of Database Size. Published, 09/2012.
    http://scholar.google.com/citations?view_op=view_c...
  • Mixed-Effects Shape Models for Estimating Longitudinal Changes in Anatomy. Published, 09/2012.
    http://scholar.google.com/citations?view_op=view_c...
  • Evaluating the effectiveness of orientation indicators with an awareness of individual differences. Published, 06/2012.
    http://scholar.google.com/citations?view_op=view_c...
  • The National Alliance for Medical Image Computing, a roadmap initiative to build a free and open source software infrastructure for translational research in medical image analysis. Published, 03/2012.
    http://scholar.google.com/citations?view_op=view_c...
  • Combined SPHARM-PDM and entropy-based particle systems shape analysis framework. Published, 02/2012.
    http://scholar.google.com/citations?view_op=view_c...
  • Toward an understanding of the short bone phenotype associated with multiple osteochondromas. Published, 01/2012.
    http://scholar.google.com/citations?view_op=view_c...
  • Morse-Smale Regression. Published, 01/2012.
    http://scholar.google.com/citations?view_op=view_c...
  • P. Zhu, S.P. Awate, S. Gerber, R.T. Whitaker, “Fast Shape-Based Nearest-Neighbor Search for Brain MRIs Using Hierarchical Feature Matching”, Int. Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI ’11), pp. 484–491, 2011. Published, 10/2011.
  • Y. Pan, W.-K. Jeong, R.T. Whitaker, “Markov surfaces: A probabilistic framework for user-assisted three-dimensional image segmentation”, Computer Vision and Image Understanding, 115(10), pp. 1375– 1383, 2011. Published, 10/2011.
  • M. Datar, Y. Gur, B. Paniagua, M. Styner, R.T. Whitaker, “Geometric Correspondence for Ensembles of Nonregular Shapes”, Int. Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI ’11), pp. 368–375, 2011. Published, 10/2011.
  • Z. Fu,W.K. Jeong, Y.Pan, R.M. Kirby, R.T. Whitaker,“A Fast Iterative Methodfor Solving the Eikonal Equation on Triangulated Surfaces”, SIAM J. Scientific Computing, 33(5), pp. 2468–2488, 2011. Published, 05/2011.
  • S. Gerber, P.T. Bremer, V. Pascucci, R. Whitaker, “Visual exploration of high dimensional scalar functions”, IEEE Trans. on Visualization and Computer Graphics 16(6), pp. 1271–1280. Published, 12/2010.
  • E. Jurrus, A.R. Paiva, S. Watanabe, J.R. Anderson, B.W. Jones, R.T. Whitaker, E.M. Jorgensen, R.E. Marc T. Tasdizen, “Detection of neuron membranes in electron microscopy images using a serial neural network architecture”, Medical Image Analysis, 14(6), pp. 770–783, 2010. Published, 12/2010.
  • S. Gerber, T. Tasdizen, P.T. Fletcher, S. Joshi, R. Whitaker, “Manifold modeling for brain population analysis”, Medical Image Anal , 14(5), pp. 643–653, 2010. Published, 10/2010.
  • P.T. Fletcher, R. Whitaker, R. Tao, M.B. DuBray, A. Froehlich, C. Ravichandran, A.L. Alexander, E.D. Bigler, N. Lange, J.E. Lainhart, “Microstructural connectivity of the arcuate fasciculus in adolescents with high-functioning autism”, Neuroimage, 51(3), pp. 1117–1125, 2010. Published, 03/2010.
  • T. Tasdizen, P. Koshevoy, B.C. Grimm, J.R. Anderson, B.W. Jones, C.B.Watt, R.T. Whitaker, R.E. Marc, “Automatic mosaicking and volume assembly for high-throughput serial-section transmission electron microscopy”, J. Neuroscience Methods, 193(1), pp. 132–144, 2010. Published, 01/2010.
  • J.R. Anderson, S. Mohammed, B. Grimm, B.W. Jones, P. Koshevoy, T. Tasdizen, R. Whitaker, R.E. Marc, “The Viking viewer for connectomics: scalable multi-user annotation and summarization of large volume data sets”, J. Microscopy, 241(1), pp. 13–28, 2010. Published, 01/2010.
  • E. Jurrus, T. Tasdizen, P. Koshevoy, P. T. Fletcher, M. Hardy, C. Chien, W. Denk, R. Whitaker, “Axon Tracking in Serial Block-Face Scanning Electron Microscopy”, ; Medical Image Analysis, 13(1), pp. 180–188, 2009. Published, 2009.
  • M. Datar, J. Cates, T. Fletcher, S. Gouttard, G. Gerig, R. Whitaker, “Particle Based Shape Regression of Open Surfaces with Applications to Developmental Neuroimaging”, Int. Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI ’09), pp. 167–174, 2009. Published, 2009.
  • S. Gerber, S. Joshi, T. Tasdizen, R. Whitaker, “On the Manifold Structure of the Space of Brain Images”, Int. Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI ’09), pp. 305– 312, 2009. Published, 2009.
  • S. Gerber, T. Tasdizen, R. Whitaker, “Dimensionality Reduction and Principal Surfaces via Kernel Map Manifolds”, Proc. Int. Conf. on Computer Vision (ICCV), 2009. Published, 2009.
  • R. Tao, P.T. Fletcher, R. Whitaker, “An Variational Image-Based Approach to the Correction of Sus- ceptibility Artifacts in the Alignment of Diffusion Weighted and Structural MRI”, Proc. Information Processing in Medical Imaging, pp. 664–672, 2009. Published, 2009.
  • W.-K. Jeong, J Beyer, M. Hadwiger, A Vazquez, H. Pfister, R. Whitaker, “Scalable and Interactive Segmentation and Visualization of Neural Processes in EM Datasets”, IEEE Trans. Visualization and Computer Graphics, (15)6, pp. 1505–1514, 2009. Published, 2009.
  • J.R. Anderson, B.W. Jones, J.-H. Yang, M.V. Shaw, C.B. Watt, P. Koshevoy, J. Spaltenstein, E. Jurrus, Kannan UV, R. Whitaker, D. Mastronarde, T. Tasdizen, R. Marc, “A Computational Framework for Ultrastructural Mapping of Neural Circuitry”, PLoS Biology 7(3), 2009. Published, 2009.

Research Statement

Image processing and analysis with applications to medical and biological images.

Presentations

  • Invited talk to Shape Analysis Working Group, "Data-Driven Shape Analysis: Applications and Future". Other, Presented, 10/30/2020.
  • Workshop on Shape in Medical Imaging, Keynote, " Data-Driven Shape Analysis: Applications and Future". Invited Talk/Keynote, Presented, 10/04/2020.
    https://shapemi.github.io/keynotes/
  • Invited talk at ExxonMobil corporate research. Invited Talk/Keynote, Presented, 07/29/2013.
  • Invited talk at Geography conference at UC Santa Barbara. Invited Talk/Keynote, Presented, 06/2013.
  • Invited talk at Pacific Northwest National Laboratory. "Statistics, Learning, and Optimization for Data Analysis and Visualization". Invited Talk/Keynote, Presented, 05/09/2013.
  • "On the Manifold Structure of the Space of Brain Images", BIRS Workshop on Sampling and Reconstruction: Applications and Advances. Invited Talk/Keynote, Presented, 11/2010.
  • "On the Manifold Structure of the Space of Brain Images", Janelia Farms Workshop on Computer Vision and Neuroscience. Invited Talk/Keynote, Presented, 11/2010.
  • "Statistics of Image Neighborhoods", Short Course, Park City Mathematics Institute. Invited Talk/Keynote, Presented, 07/2010.
  • "Scientific Computing, Visualization, and Image Analysis", University of Alabama, Mobile. Invited Talk/Keynote, Presented, 01/2010.

Research Groups

  • Suyash Awate, Research Professor. SCI Institute, School of Computing. 07/2010 - present.
  • Yaniv Gur, Postdoc. SCI Institute. 02/2010 - 09/2011.
  • Joshua Levine, Postdoc. SCI Institute. 01/2010 - present. Awards/Scholarships/Stipends: Coauthor on Int. Meshing Roundtable Best Paper Award, 2010.

Software Titles

  • ShapeWorks. Statistical Shape Analysis. Release Date: 2009. Inventors: Based on series of papers by Cates et al. (PhD student of Whitaker), released as part of the NIH P41 (CIBC) and the NIH U54 (NAMIC). Distribution List: http://www.sci.utah.edu/cibc/software.html Over 1500 downloads in the last 6 months.